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You might be able to take a look at this older blog post and modify it for your use case. When the copy command loads the data into redshift it writes an entry to Dynamo marking it processed. You could connect a Lambda function to the Dynamo streams that will allow you to trigger the queries you want to run after the data is loaded.
https://aws.amazon.com/blogs/big-data/a-zero-administration-amazon-redshift-database-loader/
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