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I'm facing a similar issue. Here's my `Appspec.yml`:

```
version: 0.0
os: linux
files:
  - source: /src/app.js
    destination: /webapps/app
hooks:
  BeforeInstall:
    - location: scripts/test-script.sh "BeforeInstall"
  AfterInstall:
    - location: scripts/test-script.sh "AfterInstall"
  ApplicationStart:
    - location: scripts/test-script.sh "ApplicationStart"
```

I clear out all references to previous deployments. I create a new deployment and run it. The error message I get is:

`scripts/test-script.sh "BeforeInstall"
Script does not exist at specified location: /opt/codedeploy-agent/deployment-root/f533eddd-98eb-4276-9454-c657056ccd25/d-ZAJ4AH94G/deployment-archive/scripts/test-script.sh "BeforeInstall" View more.`


N.b. `test-script.sh` contains only `echo $1`. It's a test-file that I'll update once I have this deployment pipeline working sucessfully.

My question is: How do I get the EC2 to run the scripts from my project's root directory, and not this `/opt/codedeploy-agent/deployment-root/<deployment-id>` directory?

Here's my appspec.yml file:

```
version: 0.0
os: linux
files:
  - source: /
    destination: /home/ec2-user/myapp
hooks:
  BeforeInstall:
    - location: scripts/remove_root_dir.sh
      timeout: 900
      runas: root
  ApplicationStart:
    - location: scripts/install_dependencies.sh
      timeout: 300
      runas: root
    - location: scripts/start_server.sh
      timeout: 300
      runas: root
  ApplicationStop:
    - location: scripts/stop_server.sh
      timeout: 300
      runas: root
```
Here's my stop_server.sh file under the scripts folder in my Angular root directory:

```
#!/bin/bash
isExistApp = `pgrep httpd`
if [[ -n  $isExistApp ]]; then
    service httpd stop        
fi
```
The error message that I get is "ScriptMissing" at the ApplicationStop step. The script is not missing. I stopped my codedeploy agent, tried to clear out the files under /opt/codedeploy-agent/deployment-root (but many were write protected), and restarted the codedeploy agent. No success after numerous attempts to get CodeDeploy to complete successfully. What should I do to get CodeDeploy working properly?"

CodeDeploy Pipeline Failures from appspec Missing Files

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