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There is no need to update the CDK scripts. All you need to do is attach the functions to some private subnets in the same VPC. Look at this to find out how to reference a CloudFormation Output in your serverless yaml.
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Am I ok to put them in the same Private Isolated subnet as the RDS? Otherwise I can create private subnets on the VPC and put them there. How do I then allow access to the RDS?
I think it would be better to attach the functions to different subnets in the same VPC. In the RDS security group reference the Lambda security group to allow access.