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I am answering this question by myself as I was asked by a customer and found a definitive answer for it.
While Azure SQL is not explicitly listed as one of the QuickSight data sources, you can still use it as a data source. TLS/SSL is also supported now, and I have tested it personally.
Example of JDBC connection parameters:
Server: "servername".database.windows.net Port: 1433 Database Name: "databasename" Username: "username"@"servername" Password: "password"
Make sure to use the "username"@"servername" format for the Username.
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Since you are able to connect but observe "no tables in the database", can you check what permissions are set for the user on Azure SQL side?
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