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EKS supports Amazon Linux 2, Bottlerocket, Windows (windows based containers). You can install a 3rd party OS in your worker node but there is no official documentation outlining set up of a BSD based system on Kubernetes.
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Thanks, this link is also relevant for those who is interested in the question - https://repost.aws/questions/QU338cvx7RTCCh5tk54WOXqw/aws-eks-supported-container-runtimes