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I am assuming here that you are using managed add-on on EKS cluster. To preserve your add-on configuration while updating your add-on, you can select "PRESERVE" in conflict resolution method, which will make sure that If conflict exists, it will preserve conflicting fields on the cluster.
In terraform, to implement the same, you can refer terraform document related to add-on, where in example you can see option of setting "PRESERVE" in resolve_conflicts_on_update.
You can read AWS blog to know more about preserving edits.
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