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If you have an EC2 Instance and and RDS instance the best way to save a backup is by taking an Snapshot, you can take and RDS snapshot from which you could recreate the RDS instance whenever you need. The same goes for the EC2, although for the EC2 I would recommend taking an Image (AMI) which creates automatically the EBS snapshots for the storage.
After the AMI is created and the RDS snapshot finished you can proceed to delete the original resources.
Hope this helps.
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