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SCT connecting to MySQL over SSL

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I used keytool to import the client cert and the key as one certificate and the server CA as its own certificate. And created a jks keystore and added that as a trust store in the SCT tool. But I am unable to establish connection to my MySQL database. I can do that using MySQL Workbench so I know my certs/password etc. work. Please let me know what I could be missing.