Questions tagged with Genomics

I would like to use the AWS Genomics CLI, but have failed to activate it both locally and on an EC2 instance. I do not have permissions to alter my IAM roles, and my IT team has tried to setup my account to work based on the info provided in the Setup documentation. However, I have had no luck. I have tried with both existing VPC and S3 bucket, as well as without. Any help is appreciated. I would like to use AWS's resources! I am pasting one error below. ``` agc account activate 2022-06-17T18:19:28+02:00 𝒊 Activating AGC with bucket '' and VPC '' Bootstrapping CDK... [--o-] 51s 2022-06-17T18:20:21+02:00 ✘ ⏳ Bootstrapping environment aws://272554863871/us-east-2... 2022-06-17T18:20:21+02:00 ✘ Using default execution policy of 'arn:aws:iam::aws:policy/AdministratorAccess'. Pass '--cloudformation-execution-policies' to customize. 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit: creating CloudFormation changeset... 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:43 PM | REVIEW_IN_PROGRESS | AWS::CloudFormation::Stack | Agc-CDKToolkit User Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:50 PM | CREATE_IN_PROGRESS | AWS::CloudFormation::Stack | Agc-CDKToolkit User Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::ECR::Repository | ContainerAssetsRepository 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | FilePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::SSM::Parameter | CdkBootstrapVersion 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | CloudFormationExecutionRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | LookupRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::S3::Bucket | StagingBucket 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | ImagePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | FilePublishingRole Resource creation Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | LookupRole Resource creation Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | CloudFormationExecutionRole Resource creation Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::S3::Bucket | StagingBucket cdk-agc-assets-272554863871-us-east-2 already exists 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::IAM::Role | FilePublishingRole Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::IAM::Role | ImagePublishingRole Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::IAM::Role | LookupRole Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::IAM::Role | CloudFormationExecutionRole Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::SSM::Parameter | CdkBootstrapVersion Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:57 PM | CREATE_FAILED | AWS::ECR::Repository | ContainerAssetsRepository Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:57 PM | ROLLBACK_IN_PROGRESS | AWS::CloudFormation::Stack | Agc-CDKToolkit The following resource(s) failed to create: [ImagePublishingRole, FilePublishingRole, CdkBootstrapVersion, LookupRole, StagingBucket, CloudFormationExecutionRole, ContainerAssetsRepository]. Rollback requested by user. 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::IAM::Role | CloudFormationExecutionRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::SSM::Parameter | CdkBootstrapVersion 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::IAM::Role | FilePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_SKIPPED | AWS::S3::Bucket | StagingBucket 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::ECR::Repository | ContainerAssetsRepository 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::IAM::Role | LookupRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 1/12 | 6:20:10 PM | DELETE_COMPLETE | AWS::IAM::Role | ImagePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 2/12 | 6:20:11 PM | DELETE_COMPLETE | AWS::SSM::Parameter | CdkBootstrapVersion 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 3/12 | 6:20:11 PM | DELETE_COMPLETE | AWS::IAM::Role | FilePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 4/12 | 6:20:11 PM | DELETE_COMPLETE | AWS::ECR::Repository | ContainerAssetsRepository 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 5/12 | 6:20:11 PM | DELETE_COMPLETE | AWS::IAM::Role | CloudFormationExecutionRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 6/12 | 6:20:12 PM | DELETE_COMPLETE | AWS::IAM::Role | LookupRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 7/12 | 6:20:13 PM | ROLLBACK_COMPLETE | AWS::CloudFormation::Stack | Agc-CDKToolkit 2022-06-17T18:20:21+02:00 ✘ 2022-06-17T18:20:21+02:00 ✘ Failed resources: 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 6:19:56 PM | CREATE_FAILED | AWS::S3::Bucket | StagingBucket cdk-agc-assets-272554863871-us-east-2 already exists 2022-06-17T18:20:21+02:00 ✘ ❌ Environment aws://272554863871/us-east-2 failed bootstrapping: Error: The stack named Agc-CDKToolkit failed creation, it may need to be manually deleted from the AWS console: ROLLBACK_COMPLETE 2022-06-17T18:20:21+02:00 ✘ at waitForStackDeploy (/Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/api/util/cloudformation.ts:311:11) 2022-06-17T18:20:21+02:00 ✘ at processTicksAndRejections (node:internal/process/task_queues:96:5) 2022-06-17T18:20:21+02:00 ✘ at prepareAndExecuteChangeSet (/Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/api/deploy-stack.ts:376:26) 2022-06-17T18:20:21+02:00 ✘ at /Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/cdk-toolkit.ts:575:24 2022-06-17T18:20:21+02:00 ✘ at async Promise.all (index 0) 2022-06-17T18:20:21+02:00 ✘ at CdkToolkit.bootstrap (/Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/cdk-toolkit.ts:572:5) 2022-06-17T18:20:21+02:00 ✘ at initCommandLine (/Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/cli.ts:342:12) 2022-06-17T18:20:21+02:00 ✘ 2022-06-17T18:20:21+02:00 ✘ The stack named Agc-CDKToolkit failed creation, it may need to be manually deleted from the AWS console: ROLLBACK_COMPLETE 2022-06-17T18:20:21+02:00 ✘ error="exit status 1" Error: an error occurred invoking 'account activate' with variables: {bucketName: vpcId: publicSubnets:false customTags:map[] subnets:[] amiId:} caused by: exit status 1 ```