By using AWS re:Post, you agree to theΒ Terms of Use
/Genomics/

Genomics

With AWS, genomics customers can dedicate more time and resources to science, speeding time to insights, achieving breakthrough research faster, and bringing lifesaving products to market.

Recent questions

see all
1/1

Unable to activate AWS Genomics CLI

I would like to use the AWS Genomics CLI, but have failed to activate it both locally and on an EC2 instance. I do not have permissions to alter my IAM roles, and my IT team has tried to setup my account to work based on the info provided in the Setup documentation. However, I have had no luck. I have tried with both existing VPC and S3 bucket, as well as without. Any help is appreciated. I would like to use AWS's resources! I am pasting one error below. ``` agc account activate 2022-06-17T18:19:28+02:00 π’Š Activating AGC with bucket '' and VPC '' Bootstrapping CDK... [--o-] 51s 2022-06-17T18:20:21+02:00 ✘ ⏳ Bootstrapping environment aws://272554863871/us-east-2... 2022-06-17T18:20:21+02:00 ✘ Using default execution policy of 'arn:aws:iam::aws:policy/AdministratorAccess'. Pass '--cloudformation-execution-policies' to customize. 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit: creating CloudFormation changeset... 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:43 PM | REVIEW_IN_PROGRESS | AWS::CloudFormation::Stack | Agc-CDKToolkit User Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:50 PM | CREATE_IN_PROGRESS | AWS::CloudFormation::Stack | Agc-CDKToolkit User Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::ECR::Repository | ContainerAssetsRepository 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | FilePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::SSM::Parameter | CdkBootstrapVersion 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | CloudFormationExecutionRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | LookupRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::S3::Bucket | StagingBucket 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | ImagePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | FilePublishingRole Resource creation Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:55 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | LookupRole Resource creation Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_IN_PROGRESS | AWS::IAM::Role | CloudFormationExecutionRole Resource creation Initiated 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::S3::Bucket | StagingBucket cdk-agc-assets-272554863871-us-east-2 already exists 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::IAM::Role | FilePublishingRole Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::IAM::Role | ImagePublishingRole Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::IAM::Role | LookupRole Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::IAM::Role | CloudFormationExecutionRole Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:56 PM | CREATE_FAILED | AWS::SSM::Parameter | CdkBootstrapVersion Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:57 PM | CREATE_FAILED | AWS::ECR::Repository | ContainerAssetsRepository Resource creation cancelled 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:19:57 PM | ROLLBACK_IN_PROGRESS | AWS::CloudFormation::Stack | Agc-CDKToolkit The following resource(s) failed to create: [ImagePublishingRole, FilePublishingRole, CdkBootstrapVersion, LookupRole, StagingBucket, CloudFormationExecutionRole, ContainerAssetsRepository]. Rollback requested by user. 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::IAM::Role | CloudFormationExecutionRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::SSM::Parameter | CdkBootstrapVersion 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::IAM::Role | FilePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_SKIPPED | AWS::S3::Bucket | StagingBucket 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::ECR::Repository | ContainerAssetsRepository 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 0/12 | 6:20:10 PM | DELETE_IN_PROGRESS | AWS::IAM::Role | LookupRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 1/12 | 6:20:10 PM | DELETE_COMPLETE | AWS::IAM::Role | ImagePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 2/12 | 6:20:11 PM | DELETE_COMPLETE | AWS::SSM::Parameter | CdkBootstrapVersion 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 3/12 | 6:20:11 PM | DELETE_COMPLETE | AWS::IAM::Role | FilePublishingRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 4/12 | 6:20:11 PM | DELETE_COMPLETE | AWS::ECR::Repository | ContainerAssetsRepository 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 5/12 | 6:20:11 PM | DELETE_COMPLETE | AWS::IAM::Role | CloudFormationExecutionRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 6/12 | 6:20:12 PM | DELETE_COMPLETE | AWS::IAM::Role | LookupRole 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 7/12 | 6:20:13 PM | ROLLBACK_COMPLETE | AWS::CloudFormation::Stack | Agc-CDKToolkit 2022-06-17T18:20:21+02:00 ✘ 2022-06-17T18:20:21+02:00 ✘ Failed resources: 2022-06-17T18:20:21+02:00 ✘ Agc-CDKToolkit | 6:19:56 PM | CREATE_FAILED | AWS::S3::Bucket | StagingBucket cdk-agc-assets-272554863871-us-east-2 already exists 2022-06-17T18:20:21+02:00 ✘ ❌ Environment aws://272554863871/us-east-2 failed bootstrapping: Error: The stack named Agc-CDKToolkit failed creation, it may need to be manually deleted from the AWS console: ROLLBACK_COMPLETE 2022-06-17T18:20:21+02:00 ✘ at waitForStackDeploy (/Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/api/util/cloudformation.ts:311:11) 2022-06-17T18:20:21+02:00 ✘ at processTicksAndRejections (node:internal/process/task_queues:96:5) 2022-06-17T18:20:21+02:00 ✘ at prepareAndExecuteChangeSet (/Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/api/deploy-stack.ts:376:26) 2022-06-17T18:20:21+02:00 ✘ at /Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/cdk-toolkit.ts:575:24 2022-06-17T18:20:21+02:00 ✘ at async Promise.all (index 0) 2022-06-17T18:20:21+02:00 ✘ at CdkToolkit.bootstrap (/Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/cdk-toolkit.ts:572:5) 2022-06-17T18:20:21+02:00 ✘ at initCommandLine (/Users/Moneill/.agc/cdk/node_modules/aws-cdk/lib/cli.ts:342:12) 2022-06-17T18:20:21+02:00 ✘ 2022-06-17T18:20:21+02:00 ✘ The stack named Agc-CDKToolkit failed creation, it may need to be manually deleted from the AWS console: ROLLBACK_COMPLETE 2022-06-17T18:20:21+02:00 ✘ error="exit status 1" Error: an error occurred invoking 'account activate' with variables: {bucketName: vpcId: publicSubnets:false customTags:map[] subnets:[] amiId:} caused by: exit status 1 ```
0
answers
0
votes
21
views
asked 13 days ago