HIVE_PARTITION_SCHEMA_MISMATCH

Even if you have a dynamic schema, your ETL job has to make sure that when you insert data into the table, the schema is compatible, for instance converting that array of string to an array of structs (even if you have a generic property name).
BTW, you shouldn't need a crawler for that. The ETL job could read the json directly and write directly into the table, that way it's likely you would detect these issues at ingestion.

This is my issue, my Array column in Glue table might be empty in one partition and might have a value.

HIVE_PARTITION_SCHEMA_MISMATCH: There is a mismatch between the table and partition schemas. The types are incompatible and cannot be coerced. The column 'edx' in table 'datalake.test' is declared as type 'array<array<string>>', but partition 'partition_0=02' declared column 'col0' as type 'array<array<struct<cdd:array<structcddc:string,cdds:string>,cdir:string,dvr:string,erce:string,epr:string,edir:string,eds:string,edts:string,edd:string,mts:string,mud:string>>>'.