HealthOmics Nextflow Workflow with Sequence Store

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I am currently trying to execute a nextflow workflow on Amazon HealthOmics, I have created a private workflow and it has completed successfully with the bam file as input from S3 but now when I have uploaded the bam file to sequence store, the workflow fails with the error: [E::hts_idx_load3] Could not load local index file '62XXXXXXXX_XXXXXXXX_SOURCE1.bam.bai' index not found for:62XXXXXXXX_XXXXXXXX_SOURCE1.bam. Invalid argument

I tried to upload the index file to sequence store but that failed as well with same error so can you suggest how can I use the sequence store data on the nextflow private workflows. My parameter for the bam refres to the readset uri of the sequence store.

Note: We have provided full access to the role executing the workflow.

asked 2 months ago155 views
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